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@prefix cc: <http://creativecommons.org/ns#> .
@prefix dc1: <http://purl.org/dc/terms/> .
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@prefix void: <http://rdfs.org/ns/void#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

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    foaf:name "Natural History Museum" .

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    dc1:creator [ a vcard:Person ;
            vcard:fn "Veerappan Deepak; Natalie Cooper; David J Gower" ] ;
    dc1:identifier <10.5519/0070625> ;
    dc1:issued "2020-10-21T13:13:18.953824"^^xsd:dateTime ;
    dc1:license <http://www.opendefinition.org/licenses/cc-by> ;
    dc1:modified "2022-11-25T12:15:37.332548"^^xsd:dateTime ;
    dc1:title "NATRICINE" ;
    dcat:contactPoint <https://data.nhm.ac.uk/user/25465e60-d52d-4200-8c4d-6d25c5b35aa0> ;
    dcat:description """# Data from the NATRICINE project led by V.Deepak (veerappandeepak@gmail.com), funded by a Marie Skłodowska-Curie Action.\r
\r
These data have been used in several papers: \r
\r
1. Deepak. V., Cooper, N., Poyarkov, N.A., Kraus, F., Burin, G., Das,A., Snarayanan, S., Streicher, J.W., Smith, S.J., & Gower, D.J. 2021. Multilocus phylogeny, natural-history traits, and classification of natricine (Serpentes: Natricinae) snakes. Zoological Journal of the Linnaean Society. 2021, zlab099. DOI: 10.1093/zlab099.\r
2. Deepak. V., Gower, D.J. & Cooper, N. 2022. Diet and habit explain head-shape convergences in natricine snakes. Journal of Evolutionary Biology.\r
\r
More details can be found at https://github.com/nhcooper123/NATRICINE-traits, https://github.com/nhcooper123/NATRICINE-ecomorph, and in the papers themselves.\r
\r
## Data for paper 1 (Zoological Journal of the Linnaean Society)\r
1. *natricine-251tips.fas*\r
2. *Mol-dating-310tips.nex*\r
3. *Natricine-MLphylogeny250tips.tre*\r
4. *120tipnewick*\r
5. *TreePL_natricine_dated.tre*\r
6. *Totnat-geo-data*\r
7. *Tot-nat-geo-data-8areas*\r
\r
## Data for paper 2 (Journal of Evolutionary Biology)\r
### Linear analyses (main text)\r
\r
1. *new_datedtree-LM.nexus*. Dated/time-calibrated phylogeny used in LM analyses.\r
2. *linear-species-means-LSR.csv*. Species means for head shape variables used in analyses.\r
3.  *metadata-data-natricine-LM.csv*. Raw specimen level measurements, along with additional data needed for analyses, including putative ecomorph.\r
4. *missing_taxa_data.csv*. List of missing taxa used to create pruned phylogeny for analyses.\r
5. *snakepca-LSR.csv*. PC (principal components) data used in analyses.\r
\r
### GMM analyses (supplemental)\r
\r
1. *new_datedtree-GMM.nexus*. Dated/time-calibrated phylogeny used in GMM analyses.\r
2.  *metadata-data-natricine-GMM.csv*. Additional data needed for analyses, including putative ecomorph.\r
3. *natricine_landmarks.TPS*. Raw landmarks from snake heads used in GMM analyses.\r
4. *sliders-natricine-landmarks.csv*. Slider definitions for GMM analyses.\r
5. *snake-data-pca-GMM.csv*. PC (principal components) data used in analyses.\r
6. *GMM images.zip*. Example images for GMM analyses. We are only able to upload those taken from NHM specimens.\r
\r
## Data for both papers\r
We also include the full natural history dataset collected for this project, along with the references used to build it (`Natricine-natural-history-data.csv` and `Natricine-natural-history-data-references.csv`), used in both paper, and the time calibrated phylogeny with no species added or pruned *datedtree.nexus*.\r
\r
*More details and metadata are available with each resource - click on the resource to access.*""" ;
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\r
The dataset contains the following variables. Note that species with "?" in their categories were coded to categories based on their head shape and relatedness to species with confirm records of certain behaviours (e.g. aquatic burrowing).	Full citations for each reference number are available in `Natricine-natural-history-references.csv`.\r
\r
* **s.no** = Serial number\r
* **species** = Binomial name\r
* **diet** = primary diet information for different natricine species  \r
* **diet_categorized** = diet were classed into eight categories:annelids (earthworms & worms), molluscs (slugs & snails), anurans (frogs & toads), aquatic generalists (includes diverse aquatic prey), generalist (includes variety of prey both terrestrial and aquatic), fish (fish only), lizards (lizards only) and crayfish (crayfish specialists)\r
* **diet_references** = Reference numbers for the diet data. \r
* **habit** = primary habit information for different natricine species\r
* **habit_categorized** = habits were classed in five categories: Aquatic, Aquatic burrowing, Burrowing, Semiaquatic, Terrestrial.  	\r
* **habit_references** = Reference numbers for habit data\r
* **reproductive_mode** = reproductive_mode were classed into two categories: oviparous and viviparous\r
* **reproductive_mode_notes** = In some species viviparous species there is evidence for parthenogenesis \r
* **reproductive_mode_references** = Reference numbers for reproduction data""" ;
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    dc1:title "metadata-data-natricine-LM.csv" ;
    dcat:accessURL <https://data.nhm.ac.uk/dataset/c803fc81-9eaa-4ea8-a16e-f5798c5393a9/resource/6a75932a-17bf-4b86-b123-863941375db5> ;
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    dc1:description "Contains images from NHM specimens used in the GMM analyses. Note that we cannot upload all raw images due to copyright issues at the different museums data were collected from. Specimen numbers and species names are provided in the image details file." ;
    dc1:format "ZIP" ;
    dc1:title "GMM images.zip" ;
    dcat:accessURL <https://data.nhm.ac.uk/dataset/c803fc81-9eaa-4ea8-a16e-f5798c5393a9/resource/7307fcd2-bca2-4829-ac8e-eb2993792852> ;
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    dc1:description "Metadata with habit and diet data for species in GMM analyses only. Required for supplemental GMM analyses in ecomorph paper." ;
    dc1:format "CSV" ;
    dc1:title "metadata-natricine-GMM.csv" ;
    dcat:accessURL <https://data.nhm.ac.uk/dataset/c803fc81-9eaa-4ea8-a16e-f5798c5393a9/resource/8443da72-8eed-4f03-acfb-a203b509c9f2> ;
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    dc1:description "Details of the images in GMM images zip folder." ;
    dc1:format "CSV" ;
    dc1:title "Image details natricine head examples.csv" ;
    dcat:accessURL <https://data.nhm.ac.uk/dataset/c803fc81-9eaa-4ea8-a16e-f5798c5393a9/resource/87fb9038-3b2d-4bb6-ac9b-93a5c3468434> ;
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    dc1:description "PCA scores for linear measurements required for analyses in ecomorph paper" ;
    dc1:format "CSV" ;
    dc1:title "snakepca.csv" ;
    dcat:accessURL <https://data.nhm.ac.uk/dataset/c803fc81-9eaa-4ea8-a16e-f5798c5393a9/resource/8bb2b0bb-a7ff-49ae-accc-04f89a2b91aa> ;
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    dc1:description "Data for the BioGeoBEARS analyses with 8 areas (see paper 1)" ;
    dc1:title "Totnat-geo-data-8areas" ;
    dcat:accessURL <https://data.nhm.ac.uk/dataset/c803fc81-9eaa-4ea8-a16e-f5798c5393a9/resource/a3128ae5-fd54-427a-9275-81219f659e00> ;
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    dc1:description "These are the full references for all natural history data collected for this project. See `Natricine-natural-history-data.csv`" ;
    dc1:format "CSV" ;
    dc1:title "Natricine-natural-history-data-references.csv" ;
    dcat:accessURL <https://data.nhm.ac.uk/dataset/c803fc81-9eaa-4ea8-a16e-f5798c5393a9/resource/b29abf60-ec91-45f6-b6c0-b4391a00548a> ;
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    dc1:description "Concatenated sequence dataset 310 tips used in molecular dating" ;
    dc1:format "NEX" ;
    dc1:title "Mol-dating-310tips.nex" ;
    dcat:accessURL <https://data.nhm.ac.uk/dataset/c803fc81-9eaa-4ea8-a16e-f5798c5393a9/resource/ba7a38f4-0974-4eb6-b468-8d413164eddb> ;
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    dc1:description "Dated phylogeny" ;
    dc1:title "TreePL_natricine_dated.tre" ;
    dcat:accessURL <https://data.nhm.ac.uk/dataset/c803fc81-9eaa-4ea8-a16e-f5798c5393a9/resource/dcb81183-bbca-41fc-b731-64489e3b424f> ;
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    dc1:description "Phylogeny with added species and with tips not present in the linear measurements analyses removed. Required for analyses in ecomorph paper." ;
    dc1:format "NEX" ;
    dc1:title "new_datedtree-LM.nexus" ;
    dcat:accessURL <https://data.nhm.ac.uk/dataset/c803fc81-9eaa-4ea8-a16e-f5798c5393a9/resource/f84cbdf1-c70c-4eaa-9d59-5a90471102d8> ;
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